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Dataset Description
  • Dataset Name: HuGE Navigator
  • Species: Human
  • Method: Literature data mining
  • No. of Genes: 188
  • Phenotype: Alcoholism
  • Publication: Wei Yu, Melinda Clyne, Anja Wulf, Ajay Yesupriya, Marta Gwinn and Muin J. Khoury. Phenopedia. HuGE Navigator. Available at: http://www.hugenavigator.net/HuGENavigator/startPagePhenoPedia.do. Accessed [Jun. 10, 2008].
  • Dataset Summary: HuGE Navigator Phenopedia provides a disease-centered view of genetic association studies summarized in the online Human Genome Epidemiology (HuGE) encyclopedia. We extracted genes associated to 9 Alcohol-related diseases (Alcohol Amnestic Disorder; Alcohol Withdrawal Delirium; Alcohol Withdrawal Seizures; Alcohol-Induced Disorders; Alcohol-Induced Disorders, Nervous System; Alcohol-Related Disorders; Alcoholic Intoxication; Alcoholic Neuropathy; Alcoholism) from HuGE Navigator Phenopedia.

    Gene list of this dataset (188 genes)
    GeneIDSymbolNameGenetic locationPhenotypeNo. of Support Publications
    5243ABCB1ATP-binding cassette, sub-family B (MDR/TAP), member 17q21.1Alcoholism2
    1636ACEangiotensin I converting enzyme (peptidyl-dipeptidase A) 117q23.3Alcoholism4
    57001ACN9ACN9 homolog (S. cerevisiae)7q21.3Alcoholism1
    4185ADAM11ADAM metallopeptidase domain 1117q21.3Alcoholism1
    118ADD1adducin 1 (alpha)4p16.3Alcoholism1
    124ADH1Aalcohol dehydrogenase 1A (class I), alpha polypeptide4q21-q23Alcoholism3
    125ADH1Balcohol dehydrogenase 1B (class I), beta polypeptide4q21-q23Alcoholism60
    126ADH1Calcohol dehydrogenase 1C (class I), gamma polypeptide4q21-q23Alcoholism34
    127ADH4alcohol dehydrogenase 4 (class II), pi polypeptide4q21-q24|4q22Alcoholism4
    128ADH5alcohol dehydrogenase 5 (class III), chi polypeptide4q21-q25Alcoholism2
    130ADH6alcohol dehydrogenase 6 (class V)4q23Alcoholism1
    131ADH7alcohol dehydrogenase 7 (class IV), mu or sigma polypeptide4q23-q24Alcoholism2
    135ADORA2Aadenosine A2a receptor22q11.23Alcoholism1
    150ADRA2Aadrenergic, alpha-2A-, receptor10q24-q26Alcoholism2
    151ADRA2Badrenergic, alpha-2B-, receptor2p13-q13Alcoholism1
    152ADRA2Cadrenergic, alpha-2C-, receptor4p16Alcoholism2
    153ADRB1adrenergic, beta-1-, receptor10q24-q26Alcoholism1
    155ADRB3adrenergic, beta-3-, receptor8p12-p11.2Alcoholism1
    183AGTangiotensinogen (serpin peptidase inhibitor, clade A, member 8)1q42-q43Alcoholism1
    185AGTR1angiotensin II receptor, type 13q21-q25Alcoholism1
    213ALBalbumin4q11-q13Alcoholism1
    216ALDH1A1aldehyde dehydrogenase 1 family, member A19q21.13Alcoholism4
    219ALDH1B1aldehyde dehydrogenase 1 family, member B19p11.1Alcoholism1
    217ALDH2aldehyde dehydrogenase 2 family (mitochondrial)12q24.2Alcoholism72
    255239ANKK1ankyrin repeat and kinase domain containing 111q23.1Alcoholism3
    290ANPEPalanyl (membrane) aminopeptidase (aminopeptidase N, aminopeptidase M, microsomal aminopeptidase, CD13, p150)15q25-q26Alcoholism1
    348APOEapolipoprotein E19q13.2Alcoholism13
    367ARandrogen receptor (dihydrotestosterone receptor; testicular feminization; spinal and bulbar muscular atrophy; Kennedy disease)Xq11.2-q12Alcoholism2
    410ARSAarylsulfatase A22q13.31-qter|22q13.33Alcoholism2
    627BDNFbrain-derived neurotrophic factor11p13Alcoholism5
    9607CARTPTCART prepropeptide5q13.2Alcoholism1
    847CATcatalase11p13Alcoholism1
    885CCKcholecystokinin3p22-p21.3Alcoholism3
    886CCKARcholecystokinin A receptor4p15.1-p15.2Alcoholism3
    887CCKBRcholecystokinin B receptor11p15.4Alcoholism2
    929CD14CD14 molecule5q22-q32|5q31.1Alcoholism2
    920CD4CD4 molecule12pter-p12Alcoholism1
    925CD8ACD8a molecule2p12Alcoholism1
    1080CFTRcystic fibrosis transmembrane conductance regulator (ATP-binding cassette sub-family C, member 7)7q31.2Alcoholism1
    1129CHRM2cholinergic receptor, muscarinic 27q31-q35Alcoholism4
    1136CHRNA3cholinergic receptor, nicotinic, alpha 315q24Alcoholism1
    1137CHRNA4cholinergic receptor, nicotinic, alpha 420q13.2-q13.3Alcoholism2
    1138CHRNA5cholinergic receptor, nicotinic, alpha 515q24Alcoholism1
    8973CHRNA6cholinergic receptor, nicotinic, alpha 68p11.21Alcoholism1
    1141CHRNB2cholinergic receptor, nicotinic, beta 2 (neuronal)1q21.3Alcoholism1
    1142CHRNB3cholinergic receptor, nicotinic, beta 38p11.2Alcoholism1
    1143CHRNB4cholinergic receptor, nicotinic, beta 415q24Alcoholism1
    1268CNR1cannabinoid receptor 1 (brain)6q14-q15Alcoholism7
    1312COMTcatechol-O-methyltransferase22q11.21-q11.23|22q11.21Alcoholism13
    1392CRHcorticotropin releasing hormone8q13Alcoholism1
    1394CRHR1corticotropin releasing hormone receptor 117q12-q22Alcoholism3
    1493CTLA4cytotoxic T-lymphocyte-associated protein 42q33Alcoholism2
    1585CYP11B2cytochrome P450, family 11, subfamily B, polypeptide 28q21-q22Alcoholism1
    1588CYP19A1cytochrome P450, family 19, subfamily A, polypeptide 115q21.1Alcoholism1
    1543CYP1A1cytochrome P450, family 1, subfamily A, polypeptide 115q22-q24Alcoholism2
    1571CYP2E1cytochrome P450, family 2, subfamily E, polypeptide 110q24.3-qterAlcoholism24
    1621DBHdopamine beta-hydroxylase (dopamine beta-monooxygenase)9q34Alcoholism5
    27185DISC1disrupted in schizophrenia 11q42.1Alcoholism2
    1743DLSTdihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)14q24.3Alcoholism1
    1812DRD1dopamine receptor D15q35.1Alcoholism4
    1813DRD2dopamine receptor D211q23Alcoholism58
    1814DRD3dopamine receptor D33q13.3Alcoholism9
    1815DRD4dopamine receptor D411p15.5Alcoholism8
    1816DRD5dopamine receptor D54p16.1Alcoholism1
    2047EPHB1EPH receptor B13q21-q23Alcoholism1
    2099ESR1estrogen receptor 16q25.1Alcoholism1
    2166FAAHfatty acid amide hydrolase1p35-p34Alcoholism2
    2534FYNFYN oncogene related to SRC, FGR, YES6q21Alcoholism2
    2550GABBR1gamma-aminobutyric acid (GABA) B receptor, 16p21.31Alcoholism1
    2554GABRA1gamma-aminobutyric acid (GABA) A receptor, alpha 15q34-q35Alcoholism8
    2555GABRA2gamma-aminobutyric acid (GABA) A receptor, alpha 24p12Alcoholism12
    2556GABRA3gamma-aminobutyric acid (GABA) A receptor, alpha 3Xq28Alcoholism1
    2558GABRA5gamma-aminobutyric acid (GABA) A receptor, alpha 515q11.2-q12Alcoholism1
    2559GABRA6gamma-aminobutyric acid (GABA) A receptor, alpha 65q34Alcoholism8
    2560GABRB1gamma-aminobutyric acid (GABA) A receptor, beta 14p12Alcoholism3
    2561GABRB2gamma-aminobutyric acid (GABA) A receptor, beta 25q34Alcoholism5
    2562GABRB3gamma-aminobutyric acid (GABA) A receptor, beta 315q11.2-q12Alcoholism5
    2566GABRG2gamma-aminobutyric acid (GABA) A receptor, gamma 25q31.1-q33.1Alcoholism4
    2571GAD1glutamate decarboxylase 1 (brain, 67kDa)2q31Alcoholism1
    2572GAD2glutamate decarboxylase 2 (pancreatic islets and brain, 65kDa)10p11.23Alcoholism1
    51083GALgalanin prepropeptide11q13.2Alcoholism2
    2587GALR1galanin receptor 118q23Alcoholism1
    8811GALR2galanin receptor 217q25.3Alcoholism1
    8484GALR3galanin receptor 322q13.1Alcoholism1
    2784GNB3guanine nucleotide binding protein (G protein), beta polypeptide 312p13Alcoholism1
    2890GRIA1glutamate receptor, ionotropic, AMPA 15q33|5q31.1Alcoholism1
    2899GRIK3glutamate receptor, ionotropic, kainate 31p34-p33Alcoholism2
    2902GRIN1glutamate receptor, ionotropic, N-methyl D-aspartate 19q34.3Alcoholism2
    2904GRIN2Bglutamate receptor, ionotropic, N-methyl D-aspartate 2B12p12Alcoholism6
    2905GRIN2Cglutamate receptor, ionotropic, N-methyl D-aspartate 2C17q25Alcoholism1
    2906GRIN2Dglutamate receptor, ionotropic, N-methyl D-aspartate 2D19q13.1-qterAlcoholism1
    2917GRM7glutamate receptor, metabotropic 73p26.1-p25.1Alcoholism1
    2918GRM8glutamate receptor, metabotropic 87q31.3-q32.1Alcoholism1
    2938GSTA1glutathione S-transferase A16p12.1Alcoholism1
    2944GSTM1glutathione S-transferase M11p13.3Alcoholism6
    2947GSTM3glutathione S-transferase M3 (brain)1p13.3Alcoholism1
    2950GSTP1glutathione S-transferase pi11q13Alcoholism4
    2952GSTT1glutathione S-transferase theta 122q11.23Alcoholism3
    3077HFEhemochromatosis6p21.3Alcoholism2
    3105HLA-Amajor histocompatibility complex, class I, A6p21.3Alcoholism1
    3106HLA-Bmajor histocompatibility complex, class I, B6p21.3Alcoholism1
    3107HLA-Cmajor histocompatibility complex, class I, C6p21.3Alcoholism1
    3176HNMThistamine N-methyltransferase2q22.1Alcoholism2
    3350HTR1A5-hydroxytryptamine (serotonin) receptor 1A5q11.2-q13Alcoholism2
    3351HTR1B5-hydroxytryptamine (serotonin) receptor 1B6q13Alcoholism12
    3352HTR1D5-hydroxytryptamine (serotonin) receptor 1D1p36.3-p34.3Alcoholism1
    3356HTR2A5-hydroxytryptamine (serotonin) receptor 2A13q14-q21Alcoholism11
    3358HTR2C5-hydroxytryptamine (serotonin) receptor 2CXq24Alcoholism5
    3361HTR5A5-hydroxytryptamine (serotonin) receptor 5A7q36.1Alcoholism1
    3362HTR65-hydroxytryptamine (serotonin) receptor 61p36-p35Alcoholism2
    3363HTR75-hydroxytryptamine (serotonin) receptor 7 (adenylate cyclase-coupled)10q21-q24Alcoholism1
    3458IFNGinterferon, gamma12q14Alcoholism1
    3586IL10interleukin 101q31-q32Alcoholism3
    3552IL1Ainterleukin 1, alpha2q14Alcoholism1
    3553IL1Binterleukin 1, beta2q14Alcoholism2
    3554IL1R1interleukin 1 receptor, type I2q12Alcoholism1
    3557IL1RNinterleukin 1 receptor antagonist2q14.2Alcoholism2
    3630INSinsulin11p15.5Alcoholism1
    3952LEPleptin7q31.3Alcoholism1
    4023LPLlipoprotein lipase8p22Alcoholism1
    4049LTAlymphotoxin alpha (TNF superfamily, member 1)6p21.3Alcoholism1
    4128MAOAmonoamine oxidase AXp11.3Alcoholism15
    4129MAOBmonoamine oxidase BXp11.23Alcoholism1
    4159MC3Rmelanocortin 3 receptor20q13.2-q13.3Alcoholism1
    11343MGLLmonoglyceride lipase3q21.3Alcoholism1
    4311MMEmembrane metallo-endopeptidase3q25.1-q25.2Alcoholism1
    4314MMP3matrix metallopeptidase 3 (stromelysin 1, progelatinase)11q22.3Alcoholism1
    4524MTHFR5,10-methylenetetrahydrofolate reductase (NADPH)1p36.3Alcoholism5
    9NAT1N-acetyltransferase 1 (arylamine N-acetyltransferase)8p23.1-p21.3Alcoholism1
    4684NCAM1neural cell adhesion molecule 111q23.1Alcoholism2
    4790NFKB1nuclear factor of kappa light polypeptide gene enhancer in B-cells 1 (p105)4q24Alcoholism1
    4846NOS3nitric oxide synthase 3 (endothelial cell)7q36Alcoholism1
    4852NPYneuropeptide Y7p15.1Alcoholism9
    1728NQO1NAD(P)H dehydrogenase, quinone 116q22.1Alcoholism1
    4835NQO2NAD(P)H dehydrogenase, quinone 26pter-q12Alcoholism2
    4929NR4A2nuclear receptor subfamily 4, group A, member 22q22-q23Alcoholism1
    9369NRXN3neurexin 314q31Alcoholism1
    4915NTRK2neurotrophic tyrosine kinase, receptor, type 29q22.1Alcoholism1
    4985OPRD1opioid receptor, delta 11p36.1-p34.3Alcoholism4
    4986OPRK1opioid receptor, kappa 18q11.2Alcoholism4
    4987OPRL1opiate receptor-like 120q13.33Alcoholism2
    4988OPRM1opioid receptor, mu 16q24-q25Alcoholism20
    10280OPRS1opioid receptor, sigma 19p13.3Alcoholism1
    5020OXToxytocin, prepro- (neurophysin I)20p13Alcoholism1
    5021OXTRoxytocin receptor3p25Alcoholism1
    5080PAX6paired box 611p13Alcoholism1
    56117PCDHA@protocadherin alpha cluster5q31Alcoholism1
    5173PDYNprodynorphin20pter-p12Alcoholism2
    5179PENKproenkephalin8q23-q24Alcoholism2
    5295PIK3R1phosphoinositide-3-kinase, regulatory subunit 1 (alpha)5q13.1Alcoholism1
    5409PNMTphenylethanolamine N-methyltransferase17q21-q22Alcoholism1
    5368PNOCprepronociceptin8p21Alcoholism1
    5443POMCproopiomelanocortin (adrenocorticotropin/ beta-lipotropin/ alpha-melanocyte stimulating hormone/ beta-melanocyte stimulating hormone/ beta-endorphin)2p23.3Alcoholism1
    5468PPARGperoxisome proliferator-activated receptor gamma3p25Alcoholism2
    5644PRSS1protease, serine, 1 (trypsin 1)7q32-qter|7q34Alcoholism1
    5663PSEN1presenilin 1 (Alzheimer disease 3)14q24.3Alcoholism1
    5787PTPRBprotein tyrosine phosphatase, receptor type, B12q15-q21Alcoholism1
    5860QDPRquinoid dihydropteridine reductase4p15.31Alcoholism1
    5914RARAretinoic acid receptor, alpha17q21Alcoholism1
    5915RARBretinoic acid receptor, beta3p24Alcoholism1
    5916RARGretinoic acid receptor, gamma12q13Alcoholism1
    6256RXRAretinoid X receptor, alpha9q34.3Alcoholism1
    6257RXRBretinoid X receptor, beta6p21.3Alcoholism2
    6258RXRGretinoid X receptor, gamma1q22-q23Alcoholism1
    6462SHBGsex hormone-binding globulin17p13-p12Alcoholism1
    6571SLC18A2solute carrier family 18 (vesicular monoamine), member 210q25Alcoholism1
    6506SLC1A2solute carrier family 1 (glial high affinity glutamate transporter), member 211p13-p12Alcoholism2
    6581SLC22A3solute carrier family 22 (extraneuronal monoamine transporter), member 36q26-q27Alcoholism1
    9497SLC4A7solute carrier family 4, sodium bicarbonate cotransporter, member 73p22Alcoholism1
    6530SLC6A2solute carrier family 6 (neurotransmitter transporter, noradrenalin), member 216q12.2Alcoholism2
    6531SLC6A3solute carrier family 6 (neurotransmitter transporter, dopamine), member 35p15.3Alcoholism15
    6532SLC6A4solute carrier family 6 (neurotransmitter transporter, serotonin), member 417q11.1-q12Alcoholism50
    6622SNCAsynuclein, alpha (non A4 component of amyloid precursor)4q21Alcoholism2
    6690SPINK1serine peptidase inhibitor, Kazal type 15q32Alcoholism1
    6870TACR3tachykinin receptor 34q25Alcoholism1
    50833TAS2R16taste receptor, type 2, member 167q31.1-q31.3|7q31Alcoholism1
    5726TAS2R38taste receptor, type 2, member 387q34Alcoholism1
    6999TDO2tryptophan 2,3-dioxygenase4q31-q32Alcoholism1
    7040TGFB1transforming growth factor, beta 119q13.2|19q13.1Alcoholism1
    7054THtyrosine hydroxylase11p15.5Alcoholism1
    7124TNFtumor necrosis factor (TNF superfamily, member 2)6p21.3Alcoholism4
    7157TP53tumor protein p5317p13.1Alcoholism1
    7166TPH1tryptophan hydroxylase 1 (tryptophan 5-monooxygenase)11p15.3-p14Alcoholism9
    121278TPH2tryptophan hydroxylase 212q21.1Alcoholism2
    7252TSHBthyroid stimulating hormone, beta1p13Alcoholism1
    54970TTC12tetratricopeptide repeat domain 1211q23.1Alcoholism2
    7421VDRvitamin D (1,25- dihydroxyvitamin D3) receptor12q13.11Alcoholism1
    7518XRCC4X-ray repair complementing defective repair in Chinese hamster cells 45q13-q14Alcoholism1